species:   Fugra
pid:       PID1006
parent:    FgmilR-7dps-96
paralog:   
locus:     NC_026477.1:3224548-3224841
matures:   ['UGGCGCGCCCAGAAAGAGGAC', 'CCUGUGAGUCUGGGAUAAUGCG']
srr:       SRR6516242
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram NC_026477.1:3224548-3224841

0 out of bounds
24 alignments
7 proper strand
7 stranded perfect matches

       ************************                                                                                                                                                                                                                                          ***********************      
UUGAAAACUCCUGUGAGUCUGGGAUAAUGCGGUCGACCUCGUCACUUGAGAACGGUUGUGCUUCGAGUUGUGUAGUUUCGCUUGAGAGGGAACCUGACCUGUGAGAAGGUUUGGUGCCGGAUGUAUCGAAGUGACCCUGUUCGGAGGGCUGAGAAGAGAGAUUGAUAUCAGGUUGUUGUGACUGGCUAGUAUCGGUAUGCAGAGCAUCAACAGAGCCACGAUACCUCGGGGAACUUCUCUCAGAAUCAAUUCUCUGGGCACUGUCCGUGGCGCGCCCAGAAAGAGGACUAUCAA
.(((....((((.(...((((((....(((((.((..((((.....))))...((((..(((((((...(((......))).......((.(((.(((((......))))).))).)).......))))))))))).(((((((((((.(((...((((((......((((((.((((((.((((((.((((....))))..))).....)))...)))))))))).))......))))))....))).))))))))))).)).))))).....)))))).).))))...))).
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGGCGCGCCCAGAAAGAGGAC------ l=21 a=5 c
---------CCUGUGAGUCUGGGAUAAUGCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=22 a=0 c*
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGGCGCGCCCAGAAAGAGGAC------ l=21 a=5 ma
---------CCUGUGAGUCUGGGAUAAUGCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=22 a=0 ma*

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGGCGCGCCCAGAAAGAGGAC------ l=21 a=5 (c,ma)
------------------------------------------------------------------------------------------------------------------UGCCGGAUGUAUCGAAGUGACCCU------------------------------------------------------------------------------------------------------------------------------------------------------------ l=24 a=1 
------------------------------GGUCGACCUCGUCACUUGAGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=22 a=1 

mb-01011
ax-1001011
ku-01
ss-101110001100
fn-101
